PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_019587
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family TCP
Protein Properties Length: 389aa    MW: 42655.6 Da    PI: 6.6586
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_019587genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.81.3e-36421962111
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssasec.eaesssssa 82 
                  +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el ++                +    ++   +++ ++++
  DCAR_019587  42 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELEELpawtpttgsipiinppN----QDQsMHHQLQQQQ 135
                  79**************************************************************88888777776654431....1112233333333 PP

          TCP  83 snsssg................................kaaksaakskksqksaasalnla 111
                  ++++ +                                 +a+++++++++ + + +++n++
  DCAR_019587 136 QQQQLHlqqhppndnsssflpasmdsdsiadtiksffpMSASADTNTSNAANVQFHQHNFQ 196
                  3222223444555556666777777766666655554422222222222222222233333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.0E-3242158IPR005333Transcription factor, TCP
PROSITE profilePS5136934.29544102IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MGDSSAQNQQ ITASRLGGLR KTSSSIGGEI VEVQGGHIVR STGRKDRHSK VCTAKGPRDR  60
RVRLSAHTAI QFYDVQDRLG YDRPSKAVDW LIKKAKAAID ELEELPAWTP TTGSIPIINP  120
PNQDQSMHHQ LQQQQQQQQL HLQQHPPNDN SSSFLPASMD SDSIADTIKS FFPMSASADT  180
NTSNAANVQF HQHNFQQHPR STSQNQDLRL SLQSLQDPML LHHQNQHEQT TGLFSGTHQM  240
SNFDGSGWSE PPSHDISRFS RMVSWNAGGD TGGSGVEGGA FVFNSPSSSM QMQQQQQALY  300
GQTQLLFSQR RPLQSSNTPS ICAWIDPSTY DHQAASSFPY QPSSMSGIGF ASAGEFSGFR  360
VPARIQGEEE EHDRVSDKPS SASSDSPQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082737.11e-128PREDICTED: transcription factor TCP4-like
RefseqXP_011082738.11e-128PREDICTED: transcription factor TCP4-like
SwissprotQ9MAH82e-98TCP3_ARATH; Transcription factor TCP3
TrEMBLM4PM761e-122M4PM76_9SOLA; TCP trancription factor
STRINGPGSC0003DMT4000322681e-118(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32072349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.15e-79TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3